WIP: doxygen + remove unused code

doc/doxy/Doxyfile

@@ -42,7 +42,7 @@ DOXYFILE_ENCODING      = UTF-8
 # title of most generated pages and in a few other places.
 # The default value is: My Project.
 
-PROJECT_NAME           = "My Project"
+PROJECT_NAME           = "CNORXZ"
 
 # The PROJECT_NUMBER tag can be used to enter a project or revision number. This
 # could be handy for archiving the generated documentation or if some version
@@ -54,7 +54,7 @@ PROJECT_NUMBER         =
 # for a project that appears at the top of each page and should give viewer a
 # quick idea about the purpose of the project. Keep the description short.
 
-PROJECT_BRIEF          =
+PROJECT_BRIEF          = "Container with Native Operation Routines (by XZ)"
 
 # With the PROJECT_LOGO tag one can specify a logo or an icon that is included
 # in the documentation. The maximum height of the logo should not exceed 55
@@ -1343,7 +1343,7 @@ HTML_COLORSTYLE        = AUTO_LIGHT
 # Minimum value: 0, maximum value: 359, default value: 220.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-HTML_COLORSTYLE_HUE    = 220
+HTML_COLORSTYLE_HUE    = 130
 
 # The HTML_COLORSTYLE_SAT tag controls the purity (or saturation) of the colors
 # in the HTML output. For a value of 0 the output will use gray-scales only. A
@@ -1351,7 +1351,7 @@ HTML_COLORSTYLE_HUE    = 220
 # Minimum value: 0, maximum value: 255, default value: 100.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-HTML_COLORSTYLE_SAT    = 100
+HTML_COLORSTYLE_SAT    = 200
 
 # The HTML_COLORSTYLE_GAMMA tag controls the gamma correction applied to the
 # luminance component of the colors in the HTML output. Values below 100
@@ -1362,7 +1362,7 @@ HTML_COLORSTYLE_SAT    = 100
 # Minimum value: 40, maximum value: 240, default value: 80.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-HTML_COLORSTYLE_GAMMA  = 80
+HTML_COLORSTYLE_GAMMA  = 140
 
 # If the HTML_DYNAMIC_MENUS tag is set to YES then the generated HTML
 # documentation will contain a main index with vertical navigation menus that

src/include/base/dtype.cc.h

@@ -1,3 +1,14 @@
+/**
+   
+   @file include/base/dtype.cc.h
+   @brief DType template member function definitions
+
+   Definitions of the template member functions of the DType class.
+   
+   Copyright (c) 2022 Christian Zimmermann. All rights reserved.
+   Mail: chizeta@f3l.de
+   
+**/
 
 #ifndef __cxz_dtype_cc_h__
 #define __cxz_dtype_cc_h__

src/include/base/dtype.h

@@ -1,3 +1,14 @@
+/**
+   
+   @file include/base/dtype.h
+   @brief DType declaration
+
+   DType is a generic type-erasing class that wrapps std::any.
+   
+   Copyright (c) 2022 Christian Zimmermann. All rights reserved.
+   Mail: chizeta@f3l.de
+   
+**/
 
 #ifndef __cxz_dynamic_meta_h__
 #define __cxz_dynamic_meta_h__

src/include/base/isq.h

@@ -1,3 +1,14 @@
+/**
+   
+   @file include/base/isq.h
+   @brief Integer sequence range and creation functions
+
+   Declaration of integer sequence range and corresponding creating function templates 
+   
+   Copyright (c) 2022 Christian Zimmermann. All rights reserved.
+   Mail: chizeta@f3l.de
+   
+**/
 
 #ifndef __cxz_isq_h__
 #define __cxz_isq_h__

src/include/base/iter.h

@@ -1,3 +1,14 @@
+/**
+   
+   @file include/base/iter.h
+   @brief Static for-loops
+
+   Declaration of function templates that can be used to implement a static for-loop
+   
+   Copyright (c) 2022 Christian Zimmermann. All rights reserved.
+   Mail: chizeta@f3l.de
+   
+**/
 
 #ifndef __cxz_iter_h__
 #define __cxz_iter_h__

src/include/base/obj_handle.cc.h

@@ -1,3 +1,14 @@
+/**
+   
+   @file include/base/obj_handle.cc.h
+   @brief ObjHandle function definition
+   
+   Implementation of the member functions of template ObjHandle
+   
+   Copyright (c) 2022 Christian Zimmermann. All rights reserved.
+   Mail: chizeta@f3l.de
+   
+**/
 
 #ifndef __cxz_obj_handle_cc_h__
 #define __cxz_obj_handle_cc_h__

src/include/base/obj_handle.h

@@ -1,3 +1,15 @@
+/**
+   
+   @file include/base/obj_handle.h
+   @brief ObjHandle template declaration
+   
+   Pointer wrapper for directly handling objects via abstract base class;
+   Provides appropriate copy implementation
+   
+   Copyright (c) 2022 Christian Zimmermann. All rights reserved.
+   Mail: chizeta@f3l.de
+   
+**/
 
 #ifndef __cxz_obj_handle_h__
 #define __cxz_obj_handle_h__
@@ -7,8 +19,6 @@
 namespace CNORXZ
 {
 
-    // Pointer wrapper for directly handling objects via abstract base class;
-    // Provides appropriate copy implementation
     template <typename T>
     class ObjHandle
     {

src/include/base/to_string.cc.h

@@ -1,3 +1,14 @@
+/**
+   
+   @file include/base/to_string.cc.h
+   @brief String converter implementation
+
+   Implementation of functions that convert a given object/type to a string
+   
+   Copyright (c) 2022 Christian Zimmermann. All rights reserved.
+   Mail: chizeta@f3l.de
+   
+**/
 
 #ifndef __cxz_to_string_cc_h__
 #define __cxz_to_string_cc_h__

src/include/base/to_string.h

@@ -1,3 +1,14 @@
+/**
+   
+   @file include/base/to_string.h
+   @brief String converter
+
+   Declaration of functions that convert a given object/type to a string
+   
+   Copyright (c) 2022 Christian Zimmermann. All rights reserved.
+   Mail: chizeta@f3l.de
+   
+**/
 
 #ifndef __cxz_to_string_h__
 #define __cxz_to_string_h__

src/include/base/utils.h

@@ -1,3 +1,12 @@
+/**
+   
+   @file include/base/utils.h
+   @brief utilities
+
+   Copyright (c) 2022 Christian Zimmermann. All rights reserved.
+   Mail: chizeta@f3l.de
+   
+**/
 
 #ifndef __cxz_utils_h__
 #define __cxz_utils_h__

src/include/base/uuid.h

@@ -1,8 +1,16 @@
+/**
+   
+   @file include/base/uuid.h
+   @brief uuid implementation
+
+   Copyright (c) 2022 Christian Zimmermann. All rights reserved.
+   Mail: chizeta@f3l.de
+   
+**/
 
 #ifndef __cxz_uuid_h__
 #define __cxz_uuid_h__
 
-//#include <cstdlib>
 #include <stdint.h>
 #include <functional>
 

src/include/cnorxz.h

@@ -1,4 +1,26 @@
 // -*- C++ -*-
+/**
+   
+   @file include/cnorxz.h
+   @brief cnorxz main header
+
+   Copyright (c) 2022 Christian Zimmermann. All rights reserved.
+   Mail: chizeta@f3l.de
+   
+**/
+
+/**
+    @mainpage CNORXZ Documentation
+
+    ## Library organization
+    
+    ## Ranges and Indices
+
+    ## Array types
+
+    ## Expressions and Operations
+    
+ **/
 
 #ifndef __cxz_cnorxz_h__
 #define __cxz_cnorxz_h__

src/include/ranges/range_base.h

@@ -1,4 +1,16 @@
 // -*- C++ -*-
+/**
+   
+   @file include/range/range_base.h
+   @brief RangeBase declaration
+
+   Include basic headers containing defintions and macros
+   used throughout this library
+
+   Copyright (c) 2022 Christian Zimmermann. All rights reserved.
+   Mail: chizeta@f3l.de
+   
+**/
 
 #ifndef __cxz_range_base_h__
 #define __cxz_range_base_h__
@@ -15,75 +27,150 @@
 namespace CNORXZ
 {
 
+    /**
+        Abstract factory base class for creating ranges.
+	Ranges can exclusively create through range factories.
+	
+	All ranges that are ever created are stored in a product map
+	(sCreated). The object type hash and the uuid of all ranges
+	the created depends on serve as keys. In the case the range does not
+	depend on any other range, its own uuid is used as key. If the
+	range is a result of a cast from another range, the latter's uuid is
+	used as key.
+
+	Derived factories are supposed to look for an existing range by
+	calling fromCreated() and, if nullptr returned, add the new range
+	to the map by calling addToCreated(). These steps are supposed to be
+	implemented by overloading the purely virtual function make().
+
+	The product is publicly accessible throught the function create().
+     */
     class RangeFactoryBase
     {
     public:
 
+	/** Default constructor */
 	RangeFactoryBase() = default;
+	
+	/** Default destructor */
 	virtual ~RangeFactoryBase() = default;
-	
+
+	/** Return the product */
 	RangePtr create();
-	
+
 	static RangePtr getRegistered(const TypeInfo& info, const RangePtr& r);
 	// check if range with uuid of r exists; if yes, return existing one, else add r and return it
 
     protected:
 
+	/** Abstract method to create the product. */
 	virtual void make() = 0;
 
+	/** access the product map (read-only) */
 	RangePtr fromCreated(const TypeInfo& info, const Vector<Uuid>& rids) const;
+
+	/** add newly created range to the product map */
 	void addToCreated(const TypeInfo& info, const Vector<Uuid>& rids, const RangePtr& r);
 
-	RangePtr mProd;
+	RangePtr mProd; /**< shared pointer to the product */
 
     private:
-	// also add single ranges here (PtrId -> own)
-	// rangeCast: PtrId -> original Range
-	static Map<SizeT,Map<Vector<Uuid>,RangePtr>> sCreated;
+
+	static Map<SizeT,Map<Vector<Uuid>,RangePtr>> sCreated; /**< the product map */
 	
     };
 
+    /**
+       Abstract range base class
+
+       A range defines a parameter space containers and operations are defined on.
+       Indices can be used to iterate over that space.
+
+       Ranges have to be created though a corresponding factory.
+       @see RangeFactoryBase
+
+       Ranges always exist within a shared pointer and cannot be copied.
+     */
     class RangeBase
     {
     public:
 	typedef DIndex IndexType;
-	
+
+	/** default destructor */
 	virtual ~RangeBase() = default;
 	
-	// virtual RangePtr sub() const; // Sptr<URange<RangePtr>> ; range of subranges (TODO!!!)
+	/** Access sub-ranges.
+	    In the case the range is multi-dimensional the num-th
+	    sub-range can be accessed through this function
+	    @param num size type argument
+	 */
 	virtual RangePtr sub(SizeT num) const;
+
+	/** Access sub-ranges.
+	    In the case the range is multi-dimensional this function returns an
+	    array of all sub-ranges (empty is one-dimensional)
+	 */
 	virtual MArray<RangePtr> sub() const;
+
+	/** Range size */
 	virtual SizeT size() const = 0;
+
+	/** Range dimension.
+	    Returns the range's dimension, which is equivalent to
+	    the number of sub-ranges. If a sub-range has non-zero dimension
+	    this is NOT taken into account!
+	 */
 	virtual SizeT dim() const = 0;
+
+	/** Range type */
 	virtual const TypeInfo& type() const = 0;
+
+	/** The type of the range's meta data */
 	virtual const TypeInfo& metaType() const = 0;
+
+	/** Meta data in string format at lexicographic position pos.
+	    @param pos size type argument
+	 */
         virtual String stringMeta(SizeT pos) const = 0;
+
+	/** Return DIndex iterating over the range's parameter space.
+	    @param pos index position, size type argument
+	 */
 	virtual DIndex index(SizeT pos = 0) const = 0;
+
+	/** Create extended range.
+	    Creates a new range consisting of the meta data spaces
+	    of this range and the range r
+	    @param r shared pointer to range used for extension
+	 */
 	virtual RangePtr extend(const RangePtr& r) const = 0;
-	
+
+	/** check if ranges are the same */
 	bool operator==(const RangeBase& in) const;
+
+	/** check if ranges are not the same */
 	bool operator!=(const RangeBase& in) const;
 
+	/** return the range's uuid */
         Uuid id() const;
-	DIndex begin() const;
-	DIndex end() const;
-	RangePtr orig() const;
-	
-	//virtual Vector<Uuid> key2() const { return Vector<Uuid>(); }
 
+	/** return a DIndex pointing to the range's first element */
+	DIndex begin() const;
+
+	/** return a DIndex pointing to the element after the range's last element */
+	DIndex end() const;
+	
 	friend RangeFactoryBase;
 	
     protected:
-	
-	RangeBase();
-	RangeBase(const RangePtr& rel);
 
-	
+	/** default constructor */
+	RangeBase();
+
 	virtual Vector<Uuid> key() const = 0;
 	// delete copy/move???
-	Uuid mId = {0,0};
-	Wptr<RangeBase> mThis;
-	RangePtr mRel; // used, if created from another range, to point on it
+	Uuid mId = {0,0}; /**< The range's uuid */
+	Wptr<RangeBase> mThis; /**< weak pointer to this range */
     };
 
     template <class Range>

src/include/ranges/urange.cc.h

@@ -175,26 +175,7 @@ namespace CNORXZ
 	    return UPos(id == this->id() ? 1 : 0);
 	}
     }
-    /*
-    template <typename MetaT>
-    template <class Index>
-    decltype(auto) UIndex<MetaT>::formatFrom(const Index& ind) const
-    {
-	return *this;
-    }
 
-    template <typename MetaT>
-    template <class Index>
-    decltype(auto) UIndex<MetaT>::slice(const Sptr<Index>& ind) const
-    {
-	if(ind != nullptr){
-	    if(ind->dim() != 0) {
-		return Sptr<UIndex<MetaT>>();
-	    }
-	}
-	return std::make_shared<UIndex<MetaT>>(*this);
-    }
-    */
     template <typename MetaT>
     template <class Xpr, class F>
     decltype(auto) UIndex<MetaT>::ifor(const Xpr& xpr, F&& f) const

src/include/ranges/urange.h

@@ -56,13 +56,7 @@ namespace CNORXZ
 	RangePtr prange(const UIndex<MetaType>& last) const;
 
 	SizeT deepFormat() const;
-	/*
-	template <class Index>
-	decltype(auto) formatFrom(const Index& ind) const;
 
-	template <class Index>
-	decltype(auto) slice(const Sptr<Index>& ind) const;
-	*/
 	template <class Xpr, class F>
 	decltype(auto) ifor(const Xpr& xpr, F&& f) const;
 

src/lib/ranges/range_base.cc

@@ -90,14 +90,6 @@ namespace CNORXZ
     {
 	return this->index(this->size());
     }
-    
-    RangePtr RangeBase::orig() const
-    {
-	if(mRel) return mRel;
-	else return RangePtr(mThis);
-    }
-
-    RangeBase::RangeBase(const RangePtr& rel) : mRel(rel) {}
 
     /****************************
      *   Non-member functions   *